PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033824t2

Common Name

TCM_033824

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 437aa MW: 46568.4 Da PI: 10.036

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033824t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.5	1.1e-16	358	411	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+ eN++L+k+ ee+ ++ ++ Thecc1EG033824t2 358 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKDENQELRKKHEEIMEMQKN 411 79**********************************************999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-14	354	420	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.473	356	407	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-14	358	410	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-15	358	407	No hit	No description
SuperFamily	SSF57959	2.13E-11	358	407	No hit	No description
CDD	cd14707	1.39E-28	358	412	No hit	No description
PROSITE pattern	PS00036	0	361	376	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MGTNMNFKNV GINPPPLADG GGNKPQPPGN IQLIRQPSIY SLTFDEFQST IGGIGKDFGS 60 MNMDELLKNI WSAEETQTMA SSSGGLEGNG GLQRQGSLTL PRTLSQKTVD EVWKDIAKEY 120 SIGKDGIGTG GTNNMPQRQQ TLGEMTLEEF LVRAGVVRED TPLVGKVNNG GFFGELPPSG 180 TNTGFGMGFQ HGGRGANLMG NRISESGNQI GIQASNLPLN VNGVRSNQHQ LAQQQQQHQQ 240 YQQPIFPKQP AVGYGAQIPL QSGGQLGSPG VRGGIAGIGD QGLSNGLIQG GAVQGGGMGM 300 VGLGGPVSVA TGSPANQLSS DGIGKSSGDT SSVSPAPYVF NGSLRGRKCS AVEKVVERRQ 360 RRMIKNRESA ARSRARKQAY TMELEAEVAK LKDENQELRK KHEEIMEMQK NQVMETMNMQ 420 QGAKKRCLRR TQTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MGTNMNFKNV GINPPPLADG GGNKPQPPGN IQLIRQPSIY SLTFDEFQST IGGIGKDFGS  60
MNMDELLKNI WSAEETQTMA SSSGGLEGNG GLQRQGSLTL PRTLSQKTVD EVWKDIAKEY  120
SIGKDGIGTG GTNNMPQRQQ TLGEMTLEEF LVRAGVVRED TPLVGKVNNG GFFGELPPSG  180
TNTGFGMGFQ HGGRGANLMG NRISESGNQI GIQASNLPLN VNGVRSNQHQ LAQQQQQHQQ  240
YQQPIFPKQP AVGYGAQIPL QSGGQLGSPG VRGGIAGIGD QGLSNGLIQG GAVQGGGMGM  300
VGLGGPVSVA TGSPANQLSS DGIGKSSGDT SSVSPAPYVF NGSLRGRKCS AVEKVVERRQ  360
RRMIKNRESA ARSRARKQAY TMELEAEVAK LKDENQELRK KHEEIMEMQK NQVMETMNMQ  420
QGAKKRCLRR TQTGPW*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017213.1	0.0	Abscisic acid responsive elements-binding factor 2 isoform 1
Refseq	XP_007017214.1	0.0	Abscisic acid responsive elements-binding factor 2 isoform 1
Swissprot	Q9M7Q4	1e-139	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A061FIW7	0.0	A0A061FIW7_THECC; Abscisic acid responsive elements-binding factor 2 isoform 1
STRING	POPTR_0002s12710.1	1e-175	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-127	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	Thecc1EG033824t2
Entrez Gene	18591185

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]